{ "_id": "6a104ee1acfb0bcc41ca0c13", "Package": "GeneticSubsetter", "Type": "Package", "Title": "Identify Favorable Subsets of Germplasm Collections", "Version": "0.8", "Date": "2016-10-25", "Author": "Ryan C. Graebner and Alfonso Cuesta-Marcos", "Maintainer": "Ryan C. Graebner ", "Description": "Finds subsets of sets of genotypes with a high\nHeterozygosity, and Mean of Transformed Kinships (MTK),\nmeasures that can indicate a subset would be beneficial for\nrare-trait discovery and genome-wide association scanning,\nrespectively.", "License": "GPL (>= 2)", "VignetteBuilder": "knitr", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-10 06:12:51 UTC", "User": "root" }, "Repository": "https://ryan-graebner.r-universe.dev", "Date/Publication": "2016-10-25 23:03:53 UTC", "RemoteUrl": "https://github.com/cran/GeneticSubsetter", "RemoteRef": "HEAD", "RemoteSha": "fe1015e29dada228a21a45875622f267054a7a37", "MD5sum": "25212e6cccdaf3c7075fe3abe16f10f3", "_user": "ryan-graebner", "_type": "src", "_file": "GeneticSubsetter_0.8.tar.gz", "_fileid": "9490789fd2bfa404095f1c0fc44c65e30f0bfe1db38fa0a1ceec8843e597d057", "_filesize": 144668, "_sha256": "9490789fd2bfa404095f1c0fc44c65e30f0bfe1db38fa0a1ceec8843e597d057", "_created": "2026-05-10T06:12:51.000Z", "_published": "2026-05-22T12:41:05.898Z", "_distro": "noble", "_jobs": [ { "job": 77381344381, "time": 116, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "6901505701" }, { "job": 77381344384, "time": 106, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "6901504582" }, { "job": 77381344481, "time": 149, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "6901528615" }, { "job": 77381344061, "time": 131, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "6901533469" }, { "job": 77381344000, "time": 127, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "6901493199" }, { "job": 77381343580, "time": 83, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7160702272" }, { "job": 77381344324, "time": 72, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "6901501052" }, { "job": 77381344172, "time": 85, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "6901502427" }, { "job": 77381343943, "time": 86, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "6901502476" } ], "_buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/cran/GeneticSubsetter", "_commit": { "id": "fe1015e29dada228a21a45875622f267054a7a37", "author": "Ryan C. Graebner ", "committer": "cran-robot ", "message": "version 0.8\n", "time": 1477436633 }, "_maintainer": { "name": "Ryan C. Graebner", "email": "ryan.graebner@gmail.com", "login": "ryan-graebner", "uuid": 2647465 }, "_registered": true, "_dependencies": [ { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "cran", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 0, "_contributors": [ { "user": "ryan-graebner", "count": 4, "uuid": 2647465 } ], "_userbio": { "uuid": 2647465, "type": "user", "name": "Ryan Graebner" }, "_downloads": { "count": 193, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/GeneticSubsetter" }, "_mentions": 1, "_searchresults": 16, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/GeneticSubsetter.html", "manual.pdf" ], "_realowner": "ryan-graebner", "_cranurl": false, "_releases": [ { "version": "0.5", "date": "2014-12-09" }, { "version": "0.6", "date": "2015-10-14" }, { "version": "0.7", "date": "2016-03-29" }, { "version": "0.8", "date": "2016-10-25" } ], "_exports": [ "CoreSetOptimizer", "CoreSetter", "CoreSetterCombined", "CoreSetterPoly", "HET", "Mat", "MTK", "MtkCalc", "PicCalc", "SubsetterMTK", "SubsetterPIC" ], "_datasets": [ { "name": "genotypes", "title": "Sample Barley Genotypes", "object": "genotypes", "file": "genotypes.rda", "class": [ "data.frame" ], "fields": [ "Genotype 1", "Genotype 2", "Genotype 3", "Genotype 4", "Genotype 5", "Genotype 6", "Genotype 7", "Genotype 8", "Genotype 9", "Genotype 10", "Genotype 11", "Genotype 12", "Genotype 13", "Genotype 14", "Genotype 15", "Genotype 16", "Genotype 17", "Genotype 18", "Genotype 19", "Genotype 20" ], "rows": 40, "table": true, "tojson": true }, { "name": "genotypes.poly", "title": "Sample Barley Genotypes", "object": "genotypes", "file": "genotypes.rda", "class": [ "matrix", "array" ], "fields": [ "Locus 1a", "Locus 1b", "Locus 2a", "Locus 2b", "Locus 3a", "Locus 3b", "Locus 4a", "Locus 4b", "Locus 5a", "Locus 5b", "Locus 6a", "Locus 6b", "Locus 7a", "Locus 7b", "Locus 8a", "Locus 8b", "Locus 9a", "Locus 9b", "Locus 10a", "Locus 10b", "Locus 11a", "Locus 11b", "Locus 12a", "Locus 12b", "Locus 13a", "Locus 13b", "Locus 14a", "Locus 14b", "Locus 15a", "Locus 15b", "Locus 16a", "Locus 16b", "Locus 17a", "Locus 17b", "Locus 18a", "Locus 18b", "Locus 19a", "Locus 19b", "Locus 20a", "Locus 20b", "Locus 21a", "Locus 21b", "Locus 22a", "Locus 22b", "Locus 23a", "Locus 23b", "Locus 24a", "Locus 24b", "Locus 25a", "Locus 25b", "Locus 26a", "Locus 26b", "Locus 27a", "Locus 27b", "Locus 28a", "Locus 28b", "Locus 29a", "Locus 29b", "Locus 30a", "Locus 30b", "Locus 31a", "Locus 31b", "Locus 32a", "Locus 32b", "Locus 33a", "Locus 33b", "Locus 34a", "Locus 34b", "Locus 35a", "Locus 35b", "Locus 36a", "Locus 36b", "Locus 37a", "Locus 37b", "Locus 38a", "Locus 38b", "Locus 39a", "Locus 39b", "Locus 40a", "Locus 40b" ], "rows": 20, "table": true, "tojson": true } ], "_help": [ { "page": "CoreSetOptimizer", "title": "Subset Optimization", "topics": [ "CoreSetOptimizer" ] }, { "page": "CoreSetter", "title": "Genotype Subsetting", "topics": [ "CoreSetter" ] }, { "page": "CoreSetterCombined", "title": "Genotype Subsetting-Alternative Method", "topics": [ "CoreSetterCombined" ] }, { "page": "CoreSetterPoly", "title": "Genotype Subsetting for Autopolyploids and Polymorphic Markers", "topics": [ "CoreSetterPoly" ] }, { "page": "GeneticSubsetter", "title": "Genetic Subsetter", "topics": [ "GeneticSubsetter" ] }, { "page": "genotypes", "title": "Sample Barley Genotypes", "topics": [ "genotypes" ] }, { "page": "genotypes.poly", "title": "Sample Barley Genotypes", "topics": [ "genotypes.poly" ] }, { "page": "HET", "title": "Heterozygosity Calculator", "topics": [ "HET" ] }, { "page": "Mat", "title": "Kinship Matrix Creator", "topics": [ "Mat" ] }, { "page": "MTK", "title": "MTK calculator", "topics": [ "MTK" ] }, { "page": "MtkCalc", "title": "MTK calculator (Depreciated)", "topics": [ "MtkCalc" ] }, { "page": "PicCalc", "title": "PIC Calculator (Depreciated)", "topics": [ "PicCalc" ] }, { "page": "SubsetterMTK", "title": "Genotype Subsetting with PIC - Method One (Depreciated)", "topics": [ "SubsetterMTK" ] }, { "page": "SubsetterPIC", "title": "Genotype Subsetting with PIC - Method One (Depreciated)", "topics": [ "SubsetterPIC" ] } ], "_rundeps": [], "_vignettes": [ { "source": "GeneticSubsetterUsersGuide.Rmd", "filename": "GeneticSubsetterUsersGuide.html", "title": "Using GeneticSubsetter to select informative subsets of germplasm collections", "author": "Ryan C Graebner", "engine": "knitr::rmarkdown", "headings": [ "Overview of GeneticSubsetter", "Subsetting using CoreSetter", "Subsetting using CoreSetterPoly" ], "created": "2016-10-25 23:03:53", "modified": "2016-10-25 23:03:53", "commits": 1 } ], "_score": 2.204119982655925, "_indexed": true, "_nocasepkg": "geneticsubsetter", "_universes": [ "ryan-graebner" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.8", "date": "2026-05-10T06:14:49.000Z", "distro": "noble", "commit": "fe1015e29dada228a21a45875622f267054a7a37", "fileid": "402f218ebe1b94f388e47642bdd98b7cd1b8254504b906f7f9f1bfd5cc42dc8b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972" }, { "r": "4.6.0", "os": "linux", "version": "0.8", "date": "2026-05-10T06:14:39.000Z", "distro": "noble", "commit": "fe1015e29dada228a21a45875622f267054a7a37", "fileid": "f422322824e1dd045070f9a53d4048a840ec6653bd31fb09cba3267eaff37241", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972" }, { "r": "4.5.3", "os": "mac", "version": "0.8", "date": "2026-05-10T06:18:43.000Z", "commit": "fe1015e29dada228a21a45875622f267054a7a37", "fileid": "37d80550ccbd74cb207935a628a7a3e0e4bfa800696698d29e2fb17190de3255", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972" }, { "r": "4.6.0", "os": "mac", "version": "0.8", "date": "2026-05-10T06:19:36.000Z", "commit": "fe1015e29dada228a21a45875622f267054a7a37", "fileid": "c50cbc95ea3de48fa00ecebab5f63ffa3f62d1d4987cb61cb472f1bf52fcf052", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972" }, { "r": "4.7.0", "os": "win", "version": "0.8", "date": "2026-05-10T06:13:59.000Z", "commit": "fe1015e29dada228a21a45875622f267054a7a37", "fileid": "ac71fac000010e7114db6773cd8b1cbbe3c554a908db243965bcd6bc3874f154", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972" }, { "r": "4.5.3", "os": "win", "version": "0.8", "date": "2026-05-10T06:14:11.000Z", "commit": "fe1015e29dada228a21a45875622f267054a7a37", "fileid": "b85883b5cea8302948dd1737d2183cbdc191de24e0123d42143af6f47b278d20", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972" }, { "r": "4.6.0", "os": "win", "version": "0.8", "date": "2026-05-10T06:14:14.000Z", "commit": "fe1015e29dada228a21a45875622f267054a7a37", "fileid": "13b50a35950b13957834b95328b2724a0c4c788e663867d252cb058a41742f28", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972" }, { "r": "4.6.0", "os": "wasm", "version": "0.8", "date": "2026-05-22T12:40:48.000Z", "commit": "fe1015e29dada228a21a45875622f267054a7a37", "fileid": "d295751f654ec164b8a0997409f45abb4fbfbf73c5b1fde76f58d7a8c89b3c6a", "status": "success", "buildurl": "https://github.com/r-universe/ryan-graebner/actions/runs/25621516972" } ] }