Package: GeneticSubsetter 0.8

GeneticSubsetter: Identify Favorable Subsets of Germplasm Collections

Finds subsets of sets of genotypes with a high Heterozygosity, and Mean of Transformed Kinships (MTK), measures that can indicate a subset would be beneficial for rare-trait discovery and genome-wide association scanning, respectively.

Authors:Ryan C. Graebner and Alfonso Cuesta-Marcos

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GeneticSubsetter.pdf |GeneticSubsetter.html✨
GeneticSubsetter/json (API)

# Install 'GeneticSubsetter' in R:
install.packages('GeneticSubsetter', repos = c('https://ryan-graebner.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.20 score 16 scripts 147 downloads 11 exports 0 dependencies

Last updated 8 years agofrom:fe1015e29d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 29 2024
R-4.5-winOKOct 29 2024
R-4.5-linuxOKOct 29 2024
R-4.4-winOKOct 29 2024
R-4.4-macOKOct 29 2024
R-4.3-winOKOct 29 2024
R-4.3-macOKOct 29 2024

Exports:CoreSetOptimizerCoreSetterCoreSetterCombinedCoreSetterPolyHETMatMTKMtkCalcPicCalcSubsetterMTKSubsetterPIC

Dependencies:

Using GeneticSubsetter to select informative subsets of germplasm collections

Ryan C Graebner

Rendered fromGeneticSubsetterUsersGuide.Rmdusingknitr::rmarkdownon Oct 29 2024.

Last update: 2016-10-25
Started: 2016-10-25