Overview of GeneticSubsetter | Subsetting using CoreSetter | Subsetting using CoreSetterPoly
Package: GeneticSubsetter 0.8
GeneticSubsetter: Identify Favorable Subsets of Germplasm Collections
Finds subsets of sets of genotypes with a high Heterozygosity, and Mean of Transformed Kinships (MTK), measures that can indicate a subset would be beneficial for rare-trait discovery and genome-wide association scanning, respectively.
Authors:
GeneticSubsetter_0.8.tar.gz
GeneticSubsetter_0.8.zip(r-4.7-any)GeneticSubsetter_0.8.zip(r-4.6-any)GeneticSubsetter_0.8.zip(r-4.5-any)
GeneticSubsetter_0.8.tgz(r-4.6-any)GeneticSubsetter_0.8.tgz(r-4.5-any)
GeneticSubsetter_0.8.tar.gz(r-4.7-any)GeneticSubsetter_0.8.tar.gz(r-4.6-any)
GeneticSubsetter_0.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
GeneticSubsetter/json (API)
| # Install 'GeneticSubsetter' in R: |
| install.packages('GeneticSubsetter', repos = c('https://ryan-graebner.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- genotypes - Sample Barley Genotypes
- genotypes.poly - Sample Barley Genotypes
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:fe1015e29d. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 100 | ||
| source / vignettes | OK | 171 | ||
| linux-release | OK | 88 | ||
| macos-release | OK | 102 | ||
| macos-oldrel | OK | 97 | ||
| windows-devel | OK | 57 | ||
| windows-release | OK | 69 | ||
| windows-oldrel | OK | 49 | ||
| wasm-release | OK | 88 |
Exports:CoreSetOptimizerCoreSetterCoreSetterCombinedCoreSetterPolyHETMatMTKMtkCalcPicCalcSubsetterMTKSubsetterPIC
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Subset Optimization | CoreSetOptimizer |
| Genotype Subsetting | CoreSetter |
| Genotype Subsetting-Alternative Method | CoreSetterCombined |
| Genotype Subsetting for Autopolyploids and Polymorphic Markers | CoreSetterPoly |
| Genetic Subsetter | GeneticSubsetter |
| Sample Barley Genotypes | genotypes |
| Sample Barley Genotypes | genotypes.poly |
| Heterozygosity Calculator | HET |
| Kinship Matrix Creator | Mat |
| MTK calculator | MTK |
| MTK calculator (Depreciated) | MtkCalc |
| PIC Calculator (Depreciated) | PicCalc |
| Genotype Subsetting with PIC - Method One (Depreciated) | SubsetterMTK |
| Genotype Subsetting with PIC - Method One (Depreciated) | SubsetterPIC |